BN1a: Generic aspects of networks

 
 

Monday, March 27th, 2006

09h00-13h00 Introduction to Dynamic Systems. Jorge Carneiro

Lunch

09h00-13h00 Study and Practice

Tuesday, March 28th, 2006

09h30-12h00 Introduction to Dynamic Systems. Jorge Carneiro

12h00-13h00 IGC Tuesday Seminar

Lunch

14h30-18h00 Study and Practice

Wednesday, March 29th, 2006

09h00-13h00 Generic aspects of networks. Jose Fernando Mendes

Lunch

14h30-18h00 Generic aspects of networks. Jose Fernando Mendes

Thursday, March 30th, 2006

09h00-13h00 Introduction to Dynamic Systems. Jorge Carneiro

Lunch

14h00-18h00 Study and Practice

Friday, March 31st, 2006

09h00-12h00 Introduction to Dynamic Systems. Jorge Carneiro

12h00-13h00 IGC Friday Seminar

Lunch

14h30-18h00 Study and Practice

 

BN1b: Protein Interaction Networks

 
 

Monday, April 3rd, 2006

10h00-12h00 Protein interactions: data, predictions and artifacts. Jose Pereira-Leal

Lunch

14h00-15h30 Bibliome informatics. Luis Rocha

15h30-18h00 Practice: Mining protein interaction data

Tuesday, April 4th, 2006

10h00-12h00 Protein interactions: structure vs biological meaning. Jose Pereira-Leal

12h00-13h00 IGC Tuesday Seminar

Lunch

14h30-15h00 On the use and abuse of the Quasi-steady state approximation. Santiago Schnell

15h30-18h00 Practice: Processing protein interaction data (characterize a network)

Wednesday, April 5th, 2006

10h00-12h00 Evolution of protein interaction networks. Jose Pereira-Leal

Lunch

14h00-17h00 Journal Club

Eisenberg E, Levanon EY. (2003) Preferential attachment in the protein network evolution. Phys Rev Lett. 2003 Sep 26;91(13):138701.

Kunin V, Pereira-Leal JB, Ouzounis CA. (2003) Functional evolution of the yeast protein interaction network. Mol Biol Evol. 2004 Jul;21(7):1171-6

Maslov S, Sneppen K. (2002) Specificity and stability in topology of protein networks. Science. 2002 May 3;296(5569):910-3.

Pereira-Leal JB, Audit B, Peregrin-Alvarez JM, Ouzounis CA. (2005) An exponential core in the heart of the yeast protein interaction network. Mol Biol Evol. 2005 Mar;22(3):421-5

Thursday, April 6th, 2006

10h00-13h00 Developing algorithms to analyze protein interaction networks. Jose Pereira-Leal

Lunch

14h30-18h00 Practice: Processing protein interaction data (integrate information on a network, define random scenarios)

Friday, April 7th, 2006

10h00-12h00 Future directions in protein interaction network analysis: Proposal preparation.

12h00-13h00 IGC Friday Seminar

Lunch

14h00-15h30 The two laws of chemical reactions in intracellular environments. Santiago Schnell

15h30-18h00 Future directions in protein interaction network analysis: Proposal presentation and panel evaluation

 

Review Week

 
 

Monday, April 24th, 2006

09h30-12h00 Study and Practice

12h00-13h00 IGC Tuesday Seminar

Lunch

14h30-18h00 Study and Practice

Wednesday, April 26th, 2006

09h30-12h00 Distribution and discussion of programming assignments and articles

10h30-13h00 Study and Practice

Lunch

14h30-18h00 Study and Practice

Thursday, April 27th, 2006

09h30-13h00 Study and Practice

Lunch

14h00-16h00 Study and Practice

16h00-18h00 Journal Club

Friday, April 28th, 2006

09h30-12h00 Study and Practice

12h00-13h00 IGC Tuesday Seminar

Lunch

15h00-18h00 Discussion of Assignments